Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M39 Chr11q_UniqueNum	BreastC_M39 Chr11q_pVal	BreastC_M39 Chr11q_Unique	ColonC_M17 Chr19 Chr11q Chr16_UniqueNum	ColonC_M17 Chr19 Chr11q Chr16_pVal	ColonC_M17 Chr19 Chr11q Chr16_Unique
Blood_Module-3.7_Undetermined	7	CCDC90B|DCUN1D5|HIKESHI|RPUSD4|THYN1|TMEM126A|TMEM126B	0.000257698840938	1	0.000197419887232	COMMD1	29	0.000317977794644	BCAT2|C16ORF91|CARHSP1|CDK2AP2|DAZAP1|DPP3|FAM192A|KXD1|MRPL2|MRPL4|MRPL48|MRPL54|MTCH2|NDUFA11|NDUFB10|NMRAL1|NUDT16L1|PET100|PNKP|RFXANK|RNASEH2C|RNPS1|SELENOH|STUB1|SURF4|TMEM138|TRIR|TRPT1|UQCC3
GSE14308_NAIVE_CD4_TCELL_VS_NATURAL_TREG_DN	4	C11ORF54|FDX1|REXO2|SLC37A4	0.000482115450476	3	0.000147224998158	NLRX1|PANX1|ST14	23	0.000817005902794	BCL7C|BRSK1|CHMP1A|EXOSC5|FBRSL1|FBXO31|GALNS|INPPL1|JUND|KCTD13|LONP1|METTL26|MVB12A|NCLN|NDUFV1|NR1H2|NUDT2|SCAF1|SDHAF1|SGTA|UNC93B1|WEE1|ZYX
GSE17974_CTRL_VS_ACT_IL4_AND_ANTI_IL12_24H_CD4_TCELL_DN	7	ACAT1|DCPS|EED|SLC37A4|THYN1|TMEM126B|ZW10	1.20801074538e-05	1	2.34968212864e-05	SND1	28	6.63393621233e-07	ARMC6|CCDC124|CLPP|DNAJA3|ECI1|ETFB|FADD|FEN1|GOT2|GSTP1|HIRIP3|LSM4|MLYCD|MRPL23|MTCH2|MTMR2|NUBP1|PAF1|POLA2|PPP1R14B|PSMD8|RBM14|RNASEH2A|RUVBL2|SF3B3|SNRNP25|TEDC2|TIMM50
GSE41867_NAIVE_VS_DAY30_LCMV_ARMSTRONG_MEMORY_CD8_TCELL_UP	3	DCUN1D5|FDX1|FOXRED1	0.000849352289743	3	0.000944886240652	ARFGAP3|COMMD1|STT3A	24	0.000753818338834	AP1G1|CKAP5|DDIAS|ELOF1|HYLS1|LAMTOR1|LIN28A|MCRIP2|MRPL23|MUS81|NDUFA7|PTDSS2|RBM4|RPL18|SELENOW|SNRNP25|TAF10|TEX261|THAP11|TUFM|YIPF2|ZNF574|ZNF771|ZNHIT2
Human Brain_Lastowska07_548genes (17533364-TableS3)	46	AASDHPPT|ACAD8|ACAT1|ALG9|ALKBH8|ARCN1|BIRC2|BUD13|C11ORF54|CEP57|CWC15|CWF19L2|DCUN1D5|DDX10|DLAT|DPAGT1|EED|EI24|FAM76B|FDX1|FOXRED1|GLB1L2|HIKESHI|HINFP|HMBS|HYOU1|MED17|MRE11|NFRKB|NKAPD1|NPAT|PTS|PUS3|RBM7|RNF214|RPUSD4|SDHD|SLC37A4|SRSF8|THYN1|TIMM8B|TMEM126A|TMEM126B|USP28|ZNF202|ZPR1	1.12757384184e-30	17	7.32895270675e-84	ANKRD49|APLP2|CEP295|CUL5|MSANTD4|PANX1|PRDM10|RDX|SIDT2|SNX19|STT3A|TAF1D|TBCEL|TMEM123|UBE4A|VPS26B|ZBTB44	45	2.25514768367e-30	ALG8|ANAPC15|BAD|C2CD3|C11ORF1|C11ORF71|CHEK1|CHORDC1|CLNS1A|CLPB|COA4|DPF2|EMSY|FDXACB1|FUT4|H2AFX|HYAL2|HYLS1|IFT46|INTS4|KDM4D|LAMTOR1|MRPL48|MTMR2|NARS2|NCAPD3|NDUFC2|NME6|NUMA1|NUP210|ORAOV1|PAAF1|PPME1|PPP1CA|RNF26|RNF169|RPS3|SLC35F2|SNORD14C|SPCS2|TAF6L|THAP12|TMEM135|TMEM218|UVRAG
Human Leukemia_Schoch05_1693genes (15902281-TableS1b)	46	AASDHPPT|ACAD8|ACAT1|ALG9|ARCN1|BIRC2|C2CD2L|CCDC90B|CEP57|DCPS|DDX10|DLAT|DPAGT1|EED|EI24|FDX1|GLB1L2|HIKESHI|HINFP|HMBS|HYOU1|MED17|MRE11|NFRKB|NKAPD1|NPAT|PAFAH1B2|PPP2R1B|PTS|PUS3|RBM7|REXO2|SDHD|SLC37A4|SRPRA|SRSF8|THYN1|TIMM8B|TMEM126B|TMEM258|USP28|VPS11|YAP1|ZNF202|ZPR1|ZW10	2.07953549531e-69	23	4.15907099062e-69	ANKRD49|APLP2|CEP295|CUL5|ENDOD1|EXPH5|MSANTD4|NECTIN1|NLRX1|PANX1|PCSK7|PRDM10|RDX|SIDT2|SIK2|SNX19|ST14|STT3A|SWAP70|TAF1D|TMEM123|UBE4A|ZBTB44	204	4.93833392443e-102	AIP|AKIP1|ALG8|AMBRA1|ANAPC15|API5|ARAP1|ARFGAP2|ARL2|ATG2A|B3GAT3|B4GAT1|BAD|BET1L|BRMS1|BSCL2|C2CD3|C11ORF1|C11ORF68|C11ORF71|C11ORF98|CAPN1|CCDC15|CCDC86|CCS|CD151|CDC42EP2|CDK2AP2|CFL1|CHEK1|CHORDC1|CKAP5|CLNS1A|CLP1|CLPB|COA4|COMMD9|CORO1B|COX8A|CPSF7|CPT1A|CRY2|CTTN|CYB5R2|DAGLA|DDB1|DEAF1|DGKZ|DPF2|DPP3|DRAP1|DTX4|DUSP8|EEF1G|EHBP1L1|EHD1|EIF3F|EIF3M|ELP4|EML3|EMSY|ESRRA|EXT2|FADD|FAM89B|FAU|FEN1|FIBP|FKBP2|FUT4|GANAB|GRM5|GSTP1|H2AFX|HNRNPUL2|HRAS|HSD17B12|IFT46|ILK|INPPL1|INTS5|IPO7|KAT5|KCNK4|KCTD14|KDM4D|LRFN4|MADD|MAML2|MAP3K11|MARK2|MEN1|MRPL11|MRPL17|MRPL23|MRPL48|MRPL49|MTCH2|MTMR2|MUS81|MYEOV|NAA40|NADSYN1|NAP1L4|NARS2|NAT10|NCAPD3|NDUFC2|NDUFS3|NDUFV1|NRGN|NUMA1|NUP98|NUP160|NXF1|ORAOV1|OSBP|PAAF1|PGAP2|PIDD1|PITPNM1|PKP3|POLA2|POLD4|POLR2G|PPFIA1|PPME1|PPP1CA|PPP1R14B|PPP6R3|PRMT3|PRPF19|PSMA1|PSMC3|PSMD13|PTDSS2|QSER1|RAB1B|RASSF7|RBM4|RBM14|RCE1|RELA|RHOD|RHOG|RNF26|RPS3|RPS6KA4|RPS6KB2|RRM1|RRP8|SAC3D1|SART1|SCGB1D2|SF1|SF3B2|SIPA1|SLC3A2|SLC29A2|SLC35F2|SLC43A1|SMPD1|SNORD14C|SNX15|SPCS2|SSH3|SSRP1|SSSCA1|ST5|STARD10|STIP1|STX5|TAF6L|TAF10|TALDO1|THAP12|TIGD3|TIMM10|TIMM10B|TKFC|TM7SF2|TMEM134|TMEM135|TMEM223|TMX2|TNKS1BP1|TOLLIP|TP53I11|TRMT112|TSSC4|UBXN1|UNC93B1|USH1C|UVRAG|VEGFB|VPS37C|WDR74|WEE1|WT1|YIF1A|ZDHHC5|ZFPL1|ZNF408|ZNHIT2
Human Lung_Daniel09_314genes (19351829-SuppTableA)	8	AASDHPPT|DCUN1D5|DLAT|EED|FDX1|NKAPD1|TIMM8B|TMEM126B	4.64626435959e-05	2	8.59044950576e-06	CUL5|MSANTD4	32	8.43348376861e-05	API5|ATN1|CABIN1|CCNF|CTDSP1|CTDSP2|DEF8|FBRSL1|FBXW4|GPT2|HNRNPM|IRF6|MED13L|MRPL48|MTMR2|OGFOD1|PDK2|PIP5K1C|PLXNB2|POLA2|RAB40C|RELL2|SHD|STEAP3|STIP1|TERF2|TIMM10B|TLN1|TRIP6|TTC9C|VWA1|ZNF500
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN	46	AASDHPPT|ACAD8|ACAT1|ALG9|ALKBH8|ARCN1|BIRC2|BUD13|C11ORF54|CEP57|CWC15|CWF19L2|DCUN1D5|DDX10|DLAT|DPAGT1|EED|EI24|FAM76B|FDX1|FOXRED1|GLB1L2|HIKESHI|HINFP|HMBS|HYOU1|MED17|MRE11|NFRKB|NKAPD1|NPAT|PTS|PUS3|RBM7|RNF214|RPUSD4|SDHD|SLC37A4|SRSF8|THYN1|TIMM8B|TMEM126A|TMEM126B|USP28|ZNF202|ZPR1	5.3209155217e-10	16	9.43983111391e-58	ANKRD49|APLP2|CEP295|CUL5|MSANTD4|PANX1|PRDM10|RDX|SIDT2|SNX19|STT3A|TAF1D|TMEM123|UBE4A|VPS26B|ZBTB44	57	1.06418310434e-09	AHDC1|ALG8|ANAPC15|B3GALT6|BAD|C2CD3|C11ORF1|C11ORF71|CHEK1|CHORDC1|CLNS1A|CLPB|COA4|DPF2|EEF1G|EMSY|FBLIM1|FBXW4|FDXACB1|FUT4|GBF1|H2AFX|HYAL2|HYLS1|IFT46|INTS4|IPO13|KDM4D|LAMTOR1|MRPL48|MTMR2|NARS2|NCAPD3|NDUFC2|NME6|NUMA1|NUP210|ORAOV1|PAAF1|PPME1|PPP1CA|RNF26|RNF169|RPS3|SELENON|SFPQ|SLC35F2|STK40|SZRD1|SZT2|TAF6L|THAP12|TMEM135|TMEM218|UVRAG|WDTC1|ZNF436-AS1
MOREAUX_B_LYMPHOCYTE_MATURATION_BY_TACI_DN	3	AASDHPPT|THYN1|TMEM126A	0.000452118782245	1	0.00090141349959	CEP295	15	2.82406490057e-06	CHEK1|EIF3G|FIBP|KEAP1|LSM4|MCM2|MRPS12|NCAPD3|NDUFA13|PAAF1|PSMD8|PTPMT1|TBCB|TIMM50|UTP4
MOREAUX_MULTIPLE_MYELOMA_BY_TACI_DN	6	AASDHPPT|C11ORF54|CEP57|HIKESHI|THYN1|TMEM126A	3.8353278256e-07	3	7.24488228725e-07	ANKRD49|CEP295|SNX19	28	4.25773363942e-08	ACD|CCDC94|CHEK1|EIF3G|EIF3M|ERCC1|FIBP|ILF3|KEAP1|LSM4|MCM2|MRPS12|NADSYN1|NCAPD3|NCLN|NDUFA13|PAAF1|PSMC4|PSMD8|PTPMT1|RUVBL2|SF3B2|SMARCA4|TBCB|TIMM29|TIMM50|TMEM135|UTP4
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_23	3	DDX10|PAFAH1B2|SDHD	0.00012637316359	1	4.32707631144e-06	PCSK7	4	0.000248419250869	CLP1|MAML2|MEN1|NUMA1
Transit peptide	9	ACAD8|ACAT1|CCDC90B|DLAT|FDX1|MRPL16|REXO2|RPUSD4|SDHD	0.000415434147937	1	0.000830862118215	NLRX1	65	6.177658634e-09	ABCB8|ACAD9|ACSF3|ALDH2|ALKBH7|BCAT2|BCKDHA|BDH1|CLPB|CLPP|COQ9|COX4I1|COX8A|CYP24A1|D2HGDH|DHODH|DHRS2|DNAJA3|DNLZ|EARS2|ECI1|ECSIT|FAHD1|FDX1L|GCDH|GOT2|GPX4|GTPBP3|HAGH|LONP1|MARS2|MCCC1|MLYCD|MPG|MRPL2|MRPL11|MRPL17|MRPL21|MRPL28|MRPL34|MRPL48|MRPL54|MRPS12|MTHFD1L|NAGS|NARS2|NDUFAB1|NDUFS3|NDUFS7|NDUFV1|NME4|NTHL1|OGDH|PDF|PDK2|PET100|POLRMT|PTPMT1|SARS2|SDHAF2|TIMM29|TIMM44|TIMM50|TRAP1|TUFM
USF2_Q6	7	C2CD2L|CEP57|DPAGT1|FAM76B|REXO2|RPUSD4|TMEM258	0.000123711792654	1	8.94862505562e-05	CUL5	27	0.000157937334751	ARL2|ATAD3A|B3GALT6|CBX5|CFL1|CPT1A|ESRRA|FEN1|ILK|IPO7|IPO13|KAT5|LIN28A|LRFN4|MTCH2|NAT10|OPRD1|RHEBL1|RRP8|SCYL1|SLC43A1|TAF6L|TAGLN2|TIMM10|UBXN1|UVRAG|WEE1
chr11q14	5	CCDC90B|EED|HIKESHI|TMEM126A|TMEM126B	6.54988517002e-08	1	9.21411009631e-08	PANX1	9	3.88566024373e-08	ALG8|CHORDC1|DDIAS|GRM5|INTS4|NARS2|NDUFC2|RHOD|TMEM135
chr11q22	11	AASDHPPT|ACAT1|ALKBH8|BIRC2|DCUN1D5|DDX10|FDX1|NPAT|PPP2R1B|PTS|SRSF8	6.35177710615e-05	4	2.96393198672e-23	CUL5|EXPH5|MSANTD4|TMEM123	1	0.000127035542123	MTMR2
chr11q23	24	ALG9|ARCN1|BUD13|C2CD2L|CWF19L2|DLAT|DPAGT1|EI24|HINFP|HMBS|HYOU1|NKAPD1|PAFAH1B2|RBM7|REXO2|RNF214|SDHD|SLC37A4|TIMM8B|USP28|VPS11|ZNF202|ZPR1|ZW10	3.73630630408e-12	9	7.9042572652e-49	NECTIN1|NLRX1|PCSK7|RDX|SIDT2|SIK2|STT3A|TBCEL|UBE4A	8	7.47261260816e-12	FAM89B|FDXACB1|H2AFX|IFT46|INPPL1|RNF26|SLC35F2|SNORD14C
chr11q24	8	DCPS|FAM118B|FOXRED1|NFRKB|PUS3|RPUSD4|SRPRA|TIRAP	2.14833188162e-05	3	2.86803758156e-15	APLP2|ST14|ZBTB44	5	4.29666376295e-05	CCDC15|CHEK1|HYLS1|NRGN|TMEM218
mitochondrial envelope [GoID:GO:0005740; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	10	ACAT1|ATP5L|CCDC90B|FOXRED1|MRPL16|REXO2|SDHD|TIMM8B|TMEM126A|TMEM126B	0.00012068275235	3	0.000241358492467	NLRX1|SLC11A2|SNPH	83	7.01223359429e-09	ABCB8|ACAD9|AMBRA1|ARL2|ATAD3A|ATP5D|BAD|BAX|BDH1|C19ORF70|CIAPIN1|COA4|COQ9|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|DHODH|DMAC2|DMPK|DNM2|ECI1|ECSIT|FAHD1|FKBP8|GOT2|HIGD2A|MCCC1|MPV17L2|MRPL2|MRPL4|MRPL11|MRPL17|MRPL21|MRPL23|MRPL28|MRPL34|MRPL48|MRPL49|MRPL54|MRPS12|MRPS34|MTCH2|ND6|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFAB1|NDUFB7|NDUFB10|NDUFC2|NDUFS3|NDUFS7|NDUFV1|NME4|NRGN|OGDH|PAM16|PET100|PLD6|PTPMT1|QTRT1|RDH13|RHOT2|RPS3|SLC9B2|SLC25A29|SPNS1|THOP1|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TMEM135|TOMM40|TRAP1|TUFM|UQCC3|UQCR11
mitochondrial membrane [GoID:GO:0031966; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	9	ACAT1|ATP5L|CCDC90B|FOXRED1|MRPL16|SDHD|TIMM8B|TMEM126A|TMEM126B	0.000258767288017	3	0.000517518512133	NLRX1|SLC11A2|SNPH	79	1.60639018735e-08	ABCB8|ACAD9|AMBRA1|ATAD3A|ATP5D|BAD|BAX|BDH1|C19ORF70|COQ9|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|DHODH|DMAC2|DMPK|DNM2|ECI1|ECSIT|FAHD1|FKBP8|GOT2|HIGD2A|MCCC1|MPV17L2|MRPL2|MRPL4|MRPL11|MRPL17|MRPL21|MRPL23|MRPL28|MRPL34|MRPL48|MRPL49|MRPL54|MRPS12|MRPS34|MTCH2|ND6|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFAB1|NDUFB7|NDUFB10|NDUFC2|NDUFS3|NDUFS7|NDUFV1|NME4|NRGN|OGDH|PAM16|PET100|PLD6|PTPMT1|QTRT1|RDH13|RHOT2|RPS3|SLC9B2|SLC25A29|SPNS1|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TMEM135|TOMM40|TRAP1|TUFM|UQCC3|UQCR11
mitochondrial part [GoID:GO:0044429; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	14	ACAD8|ACAT1|ATP5L|CCDC90B|DLAT|FDX1|FOXRED1|MRPL16|REXO2|RPUSD4|SDHD|TIMM8B|TMEM126A|TMEM126B	2.2588952044e-05	3	4.51778996964e-05	NLRX1|SLC11A2|SNPH	115	4.39150577226e-12	ABCB8|ACAD9|ACSF3|ALDH2|ALKBH7|AMBRA1|ARL2|ATAD3A|ATG4D|ATP5D|BAD|BAX|BCAT2|BCKDHA|BDH1|C19ORF70|CIAPIN1|CLPP|COA4|COQ9|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|D2HGDH|DDX28|DHODH|DHRS2|DMAC2|DMPK|DNAJA3|DNM2|EARS2|ECI1|ECSIT|ETFB|FAHD1|FDX1L|FKBP8|GADD45GIP1|GCDH|GOT2|GPT2|HAGH|HIGD2A|KARS|LONP1|MARS2|MCCC1|MLYCD|MPG|MPV17L2|MRPL2|MRPL4|MRPL11|MRPL17|MRPL21|MRPL23|MRPL28|MRPL34|MRPL48|MRPL49|MRPL54|MRPS12|MRPS34|MTCH2|MTHFD1L|NAGS|NARS2|ND6|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFAB1|NDUFB7|NDUFB10|NDUFC2|NDUFS3|NDUFS7|NDUFV1|NME4|NRGN|NUDT2|OGDH|PAM16|PDK2|PET100|PLD6|POLRMT|PTPMT1|QTRT1|RDH13|RHOT2|RPS3|SARS2|SDHAF1|SDHAF2|SLC9B2|SLC25A29|SPNS1|THOP1|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TMEM135|TOMM40|TRAP1|TUFM|UQCC3|UQCR11
